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1

Conserved water mediated recognition and the dynamics of active site Cys 331 and Tyr 411 in hydrated structure of human IMPDH-II

Hridoy R. Bairagya, Bishnu P. Mukhopadhyay, Asim K. Bera

Journal:

Journal of Molecular Recognition

Year:

2011

Language:

english

File:

PDF, 410 KB

english, 2011

2

Synthesis, microbiological study and X-ray structural characterisation of a tri-n-butylstannyl-2[4(diethylamino)arylazo]benzenecarboxylate

Sibani Chakraborty, Asim K Bera, Suparna Bhattacharya, Sreya Ghosh, Asok K Pal, Soumen Ghosh, Asok Banerjee

Journal:

Journal of Organometallic Chemistry

Year:

2002

Language:

english

File:

PDF, 113 KB

english, 2002

3

Insight to structural subsite recognition in plant thiol protease-inhibitor complexes : Understanding the basis of differential inhibition and the role of water

Suparna Bhattacharya, Sreya Ghosh, Sibani Chakraborty, Asim K Bera, Bishnu P Mukhopadhayay, Indrani Dey, Asok Banerjee

Journal:

BMC Structural Biology

Year:

2001

Language:

english

File:

PDF, 3.32 MB

english, 2001

4

Conserved water-mediated H-bonding dynamics of catalytic Asn 175 in plant thiol protease

Tapas K. Nandi, Hridoy R. Bairagya, Bishnu P. Mukhopadhyay, K. Sekar, Dipankar Sukul, Asim K. Bera

Journal:

Journal of Biosciences

Year:

2009

Language:

english

File:

PDF, 624 KB

english, 2009

5

Synthesis, characterization and enhanced photoconductivity from a mesoporous titania on dye doping

Nabanita Pal, Manidipa Paul, Ashoke Bera, Durga Basak, Asim Bhaumik

Journal:

Analytica Chimica Acta

Year:

2010

Language:

english

File:

PDF, 436 KB

english, 2010

6

Influences of cooperative hydrogen bonding economy on protein-nucleic acid complexation: Structure of unidecahydrated Inosine C5′-monophosphate and L-glutamine (2C10H13N4O8P · C5H10N2O3 · 11H2O) cocrystal at atomic resolution

Asim K. Bera, Bishnu P. Mukhopadhyay, S. Ghosh, S. Bhattacharya, S. Chakraborty, Asok Banerjee

Journal:

Journal of Chemical Crystallography

Year:

1999

Language:

english

File:

PDF, 129 KB

english, 1999

7

Regiospecificity of nucleotide–amino acid mating vs. water dynamics: a key to protein–nucleic acid assemblies: structure of unidecahydrated inosine-5′-monophosphate and L–glutamic acid (2C10H13N4O8P·C5H11NO4·11H2O) cocrystal at atomic resolution

Suparna Bhattacharya, Asim K. Bera, S. Ghosh, S. Chakraborty, B.P. Mukhopadhyay, A. Pal, Asok Banerjee

Journal:

Journal of Chemical Crystallography

Year:

2000

Language:

english

File:

PDF, 119 KB

english, 2000

8

Unusual nucleotide stability through C–H

Asim K. Bera, Asok Banerjee, Bishnu P. Mukhopadhyay

Journal:

Journal of Chemical Crystallography

Year:

2002

Language:

english

File:

PDF, 406 KB

english, 2002

9

Hydrogen bonding cooperativity of water to nucleotide recognition: structure of octadecahydrated inosine 5′-monophosphate, 2(C10H12N4O8P)·18H2O at atomic resolution

Asim K. Bera, Bishnu P. Mukhopadhyay, Asok K. Pal, U. Haldar, S. Bhattacharya, Asok Banerjee

Journal:

Journal of Chemical Crystallography

Year:

1998

Language:

english

File:

PDF, 520 KB

english, 1998

10

Conserved water-mediated H-bonding dynamics of catalytic His159 and Asp158: insight into a possible acid–base coupled mechanism in plant thiol protease

Tapas K. Nandi, Hridoy R. Bairagya, Bishnu P. Mukhopadhyay, Payel Mallik, Dipankar Sukul, Asim K. Bera

Journal:

Journal of Molecular Modeling

Year:

2012

Language:

english

File:

PDF, 320 KB

english, 2012

11

Role of Salt Bridge Dynamics in Inter Domain Recognition of Human IMPDH Isoforms: An Insight to Inhibitor Topology for Isoform-II

Bairagya, Hridoy R., Mukhopadhyay, Bishnu P., Bera, Asim K.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 8.05 MB

english, 2011

12

Crystal Structure of the Pyocyanin Biosynthetic Protein PhzS †‡

Greenhagen, Bryan T., Shi, Katherine, Robinson, Howard, Gamage, Swarna, Bera, Asim K., Ladner, Jane E., Parsons, James F.

Journal:

Year:

2008

Language:

english

File:

PDF, 369 KB

english, 2008

13

Structural and Kinetic Analysis of Catalysis by a Thiamin Diphosphate-Dependent Enzyme, Benzoylformate Decarboxylase †

Polovnikova, Elena S., McLeish, Michael J., Sergienko, Eduard A., Burgner, John T., Anderson, Natalie L., Bera, Asim K., Jordan, Frank, Kenyon, George L., Hasson, Miriam S.

Journal:

Year:

2003

Language:

english

File:

PDF, 596 KB

english, 2003

14

Structure of PqsD, a Pseudomonas Quinolone Signal Biosynthetic Enzyme, in Complex with Anthranilate

Bera, Asim K., Atanasova, Vesna, Robinson, Howard, Eisenstein, Edward, Coleman, James P., Pesci, Everett C., Parsons, James F.

Journal:

Year:

2009

Language:

english

File:

PDF, 3.94 MB

english, 2009

15

An Insight to Conserved Water Molecular Dynamics of Catalytic and Structural Zn +2 ions in Matrix Metalloproteinase 13 of Human

Chakrabarti, Bornali, Bairagya, Hridoy R., Mallik, Payel, Mukhopadhyay, Bishnu P., Bera, Asim K.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 956 KB

english, 2011

16

Structure of Aminodeoxychorismate Synthase from Stenotrophomonas maltophilia

Bera, Asim K., Atanasova, Vesna, Dhanda, Anjali, Ladner, Jane E., Parsons, James F.

Journal:

Year:

2012

Language:

english

File:

PDF, 4.11 MB

english, 2012

17

Mechanism-Based Inactivation of Benzoylformate Decarboxylase, A Thiamin Diphosphate-Dependent Enzyme

Bera, Asim K., Polovnikova, Lena S., Roestamadji, Juliatek, Widlanski, Theodore S., Kenyon, George L., McLeish, Michael J., Hasson, Miriam S.

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 110 KB

english, 2007

18

Research Strategies for Design and Development of NSAIDs: Clue to Balance Potency and Toxicity of Acetanilide Compounds

Pal, Asok K., Sen, Sawan, Ghosh, Sreya, Bera, Asim K., Bhattacharya, Suparna, Chakraborty, Sibani, Banerjee, Asok

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2001

Language:

english

File:

PDF, 108 KB

english, 2001

19

Facile Growth of Multi-twined Au Nanostructures

BERA, RAJ KUMAR, BHAUMIK, ASIM, RAJ, C RETNA

Journal:

Journal of Chemical Sciences

Year:

2015

Language:

english

File:

PDF, 842 KB

english, 2015

20

In Silico Identification of Bioremediation Potential: Carbamazepine and Other Recalcitrant Personal Care Products

Aukema, Kelly G., Escalante, Diego E., Maltby, Meghan M., Bera, Asim K., Aksan, Alptekin, Wackett, Lawrence P.

Journal:

Environmental Science & Technology

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

21

Rapid synthesis for monodispersed gold nanoparticles in kaempferol and anti-leishmanial efficacy against wild and drug resistant strains

Halder, Asim, Das, Suvadra, Bera, Tanmoy, Mukherjee, Arup

Journal:

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

22

Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel

Bera, Asim K, Aukema, Kelly G., Elias, Mikael, Wackett, Lawrence P.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

23

Diel cyclic hypoxia alters plasma lipid dynamics and impairs reproduction in goldfish (Carassius auratus)

Bera, Aritra, Sawant, Paramita Banerjee, Dasgupta, Subrata, Chadha, N. K., Sawant, Bhawesh T., Pal, Asim Kumar

Journal:

Fish Physiology and Biochemistry

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

24

Takinib, a Selective TAK1 Inhibitor, Broadens the Therapeutic Efficacy of TNF-α Inhibition for Cancer and Autoimmune Disease

Totzke, Juliane, Gurbani, Deepak, Raphemot, Rene, Hughes, Philip F., Bodoor, Khaldon, Carlson, David A., Loiselle, David R., Bera, Asim K., Eibschutz, Liesl S., Perkins, Marisha M., Eubanks, Amber L.,

Journal:

Cell Chemical Biology

Year:

2017

Language:

english

File:

PDF, 3.82 MB

english, 2017

25

KRAS Switch Mutants D33E and A59G Crystallize in the State 1 Conformation

Lu, Jia, Bera, Asim K., Gondi, Sudershan, Westover, Kenneth D.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.11 MB

english, 2017

26

Andrographolide engineered gold nanoparticle to overcome drug resistant visceral leishmaniasis

Das, Suvadra, Halder, Asim, Mandal, Saptarshi, Mazumder, Mohammad Abu Jafar, Bera, Tanmoy, Mukherjee, Arup, Roy, Partha

Journal:

Artificial Cells, Nanomedicine, and Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

27

p53 Dependent Apoptotic Cell Death Induces Embryonic Malformation in Carassius auratus under Chronic Hypoxia

Sawant, Paramita Banerjee, Bera, Aritra, Dasgupta, Subrata, Sawant, Bhawesh T., Chadha, Narinder K., Pal, Asim K., Fei, Peiwen

Journal:

Year:

2014

Language:

english

File:

PDF, 1.90 MB

english, 2014

28

Tissue-specific oncogenic activity of K-RasA146T

Poulin, Emily J., Bera, Asim K., Lu, Jia, Lin, Yi-Jang, Strasser, Samantha Dale, Paulo, Joao A., Huang, Tannie Q, Morales, Carolina, Yan, Wei, Cook, Joshua, Nowak, Jonathan A., Brubaker, Douglas K, Jo

Journal:

Cancer Discovery

Year:

2019

Language:

english

File:

PDF, 971 KB

english, 2019

29

Publisher Correction: Green Synthesis of Substituted Anilines and Quinazolines from Isatoic Anhydride-8-amide

Gondi, Sudershan R., Bera, Asim K., Westover, Kenneth D.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 619 KB

english, 2019

30

GTP hydrolysis is modulated by Arg34 in the RASopathy-associated KRAS P34R

Bera, Asim K., Lu, Jia, Lu, Chunya, Li, Lianbo, Gondi, Sudershan, Yan, Wei, Nelson, Andrew, Zhang, Goujun, Westover, Kenneth D.

Journal:

Birth Defects Research

Year:

2020

Language:

english

File:

PDF, 4.53 MB

english, 2020

31

Structure and Characterization of a Covalent Inhibitor of Src Kinase

Gurbani, Deepak, Du, Guangyan, Henning, Nathaniel J., Rao, Suman, Bera, Asim K., Zhang, Tinghu, Gray, Nathanael S., Westover, Kenneth D.

Journal:

Frontiers in Molecular Biosciences

Year:

2020

File:

PDF, 902 KB

2020

32

KRASQ61H preferentially signals through MAPK in a RAF dimer-dependent manner in non-small cell lung cancer

Zhou, Zhi-Wei, Ambrogio, Chiara, Bera, Asim K, Li, Qing, Li, Xing-Xiao, Li, Lianbo, Son, Jieun, Gondi, Sudershan, Li, Jiaqi, Campbell, Emily, Jin, Hua, Okoro, Jeffrey J., Xu, Cheng-Xiong, Janne, Pasi

Journal:

Cancer Research

Year:

2020

File:

PDF, 5.99 MB

2020

33

An enumerative algorithm for de novo design of proteins with diverse pocket structures

Basanta, Benjamin, Bick, Matthew J., Bera, Asim K., Norn, Christoffer, Chow, Cameron M., Carter, Lauren P., Goreshnik, Inna, Dimaio, Frank, Baker, David

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.25 MB

2020

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